Package index • Buccaneer

All functions

Assemblage_regional_richness(): Calculate Species Richness Across Time Slices and Grid Cells
IndivSpec_reach_distance(): Calculate Mean Individual Species Trait Distances Across Time Slices With Reach Criteria
IndivSpec_regional_coex(): Calculate Regional Individual Species Coexistence Across Time Slices
IndivSpec_regional_distance(): Calculate Mean Trait Distance for Individual Species Co-occurring at Regional Scale
IndivSpec_site_coexistence(): Calculate Species-Level Co-occurrence at Sites Across Time Slices
IndivSpec_site_distance(): Calculate Mean Trait Distance for Individual Species Co-occurring at Local Sites
IndivSpecies_reach_coexistence(): Compute Individual Species Coexistence based on reach criteria
assemblage_nspecies(): Calculate the number of species in each grid/assemblage/site
assemblage_site_trait_distance(): Compute mean distance for species co occurring in sites/grids
assemblage_site_trait_distance_null(): Compute Mean Pairwise Distances Between Species Cooccurring in Local Assemblages
aux_matrix_regional_coex(): Generate Regional Species Co-occurrence Matrices Across Time Slices
calc_null_model(): Calculate Null Model for Trait Distances with Fixed Site Richness
check_crossing_boundaries(): Check Occurrence Records Crossing Time Bin Boundaries
clade_reach_coexistence(): Compute species coexistence for each time slice based on reach metric
clade_reach_distance(): Calculate Mean Clade-Level Trait Distances Across Time Slices With Reach Criteria
clade_regional_coexistence(): Calculate Regional Species Richness Across Time Slices
clade_regional_distance(): Calculate Regional Mean Trait Distances Across Time Slices
clade_site_coexistence(): Calculate Mean Site-Level Species Coexistence Across Time Slices
clade_site_distance(): Calculate Mean Site-Level Trait Distances Across Time Slices
clean_occ_fossil(): Clean and Flag Fossil Occurrence Records Based on Multiple Criteria
comp_site_cooccurr(): Calculate Species Co-occurrence Matrices Based on Site Overlap Across Time Slices
comp_site_occurrence(): Calculate Site-Based Species Occurrence Across Time Slices
comp_slice_occ_cooccurr(): Calculate Species Co-occurrence Matrices Based on Time Slice Overlap
df_longevities_canidae: Longevities for 133 Canidae species
df_occurrence_canidae: Occurrence records
get_summary_interval(): Compute Summary Statistics from Fossil Records Across Time Intervals
get_summary_slices(): Get Summary Information for Species Across Time Slices
plot_occ_bins(): Plot Fossil Occurrence Records and Species Age Ranges
traits_canidae: Trait data for 133 Canidae species