Package index • buccaneer

All functions

Assemblage_regional_mpd(): Compute mean pairwise distance for each site in time slices

Assemblage_regional_richness(): Mean richness by communities in a time series

IndivSpec_reach_richness(): Compute individual species coexistence based on reach criteria

IndivSpec_site_coex(): Compute time series for species based on mean co-occurrence per site

IndivSpec_site_distance(): Compute mean distance for individual species cooccurring in sites

IndivSpec_site_mpd(): Compute mean pairwise distance for each species co-occurring in sites and time slices

IndivSpecies_regional_coex(): Calculate individual species coexistence in regional scale

IndivSpecies_regional_mpd(): Compute regional time series of Individual Species Mean Pairwise trait distance

aux_matrix_regional_coex(): Auxiliary function to compute regional coexistence matrix

aux_mpd_general(): Auxiliar function to calculate trait distance considering different distance thresholds

calc_reach(): Auxiliar function to calculate reach criteria

check_crossing_boundaries(): Check occurrence records with crossing boundaries in time bins

clade_regional_distance(): Compute regional clade mean trait distance in a time series

clade_regional_mpd(): Compute regional clade Mean Pairwise Distance in a time series

clade_site_distance(): Compute mean distance for species cooccurring in sites

clade_site_richness(): Compute time series based on mean site richness

clean_occ_fossil(): Cleaning and flagging fossil occurrence records according different criteria

comp_site_cooccurr(): Auxiliary function to compute site cooccurrence matrix per timeslice

get_summary_interval(): Compute summary statistics from fossil record

get_summary_slices(): Getting summary information for time bins

plot_occ_bins(): Plot occurrence records and age ranges

regional_clade_richness(): Calculates regional clade richness for lineages

ses.mpd.modif(): Title