Function reference
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akodon_newick - Phylogenetic tree in of Akodon genus
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akodon_sites - Occurrence data for Akodon species
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averaged_rates - Averaged rates of life mode for Sigmodontinae assemblages
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calc_affiliation_evoreg() - Affiliation of assemblages based on phylogenetic turnover
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calc_age_arrival() - Computes the arrival ages of each species in the assemblages
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calc_ancestral_state() - Ancestral State per Assemblage
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calc_dispersal_from() - Proportional contribution of an ancestral area to the species in other region
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calc_evoregions() - Defining biogeographic regions based on phylogenetic turnover
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calc_insitu_diversification() - Tip-based in-situ diversification metrics
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calc_insitu_metrics() - Diversification-based PD and PE
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calc_spp_association_evoreg() - Quantifying species association with evoregions
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calc_tip_based_trait_evo() - Tip-based metrics of trait evolution
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find_max_nclust() - Estimate the maximum number of groups in DAPC analysis
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get_node_range_BioGeoBEARS() - Get node ranges from BioGeoBEARS biome reconstruction model
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get_nodes_info_core() - Auxiliary function to compute information of node path and dispersal path for each species
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get_region_occ() - Species occurrence in each evoregion
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get_spp_nodes() - Species and their respective ancestral nodes
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get_tipranges_to_BioGeoBEARS() - Generates lagrangePHYLIP file for using in BioGeoBEARS
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regions - Output from
evoregionfunction with classification of 732 assemblages
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resDEC - Output from BioGeoBEARS
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rodent_phylo - Phylogenetic tree with 285 species
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std_name_evoregion() - Standardize the evoregion names after 'adegenet::find.clusters'
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toy_treeEx - Hypothetical phylogenetic tree
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trait - Trait on foraging strata for small rodent