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Generates lagrangePHYLIP file for using in BioGeoBEARS

get_tipranges_to_BioGeoBEARS.Rd

It prepares and save the file to be used as geographical areas in BioGeoBEARS scripts. It was based on save_tipranges_to_LagrangePHYLIP function of BioGEOBEARS package.

Usage

get_tipranges_to_BioGeoBEARS(
  tip_range,
  filename = "lagrange_area_data_file.data",
  areanames = NULL
)

Arguments

tip_range

data frame. Tip names in rows, geographical areas in columns. Please provide the tip names as row.names. See example.

filename

filename to store the data. By default it is "lagrange_area_data_file.data".

areanames

the names of the areas. By defaut the area names are generated as sequencial upper case letters.

Examples