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Get data frame of transition states from Biogeographical Stochastic Mapping

get_insert_df.Rd

Get data frame of transition states from Biogeographical Stochastic Mapping

Usage

get_insert_df(bsm, phyllip.file, max.range.size, include_null_range = TRUE)

Arguments

bsm

results from the function calc_bsm()

phyllip.file

path to the phyllip file used in the original model

max.range.size

maximum range size used in the biogeographical reconstruction

include_null_range

default TRUE.

Value

a list with same length as the number of stochastic mapping. Each list element is a data frame with columns:

  • child = child node number,

  • parent = ancestor node number,

  • event_time = time of the event from parent to child,

  • node_area = the range area in the event,

  • event_type = the type of event,

  • source = can be 'cladogenesis' or 'anagenesis'